It probably wear on the 3rd gear shifter fork. Short of a trans rebuild, you can try adjusting the gear shift lever location. This might help, loosen the four bolts holding the shift lever. There is typical about a mm of clearance in the bolt holes. Try moving the shift lever assembly rearward. That should give you slight more travel for 3rd gear engagement when shifting gears.
After removing and reassembly of my shift lever, the trans did not shift as smoothly as before. Adjusting the lever location solve the problem. Davew7